Welcome to Ais’ documentation!

Attention

The Ais documentation has moved. These pages are no longer maintained and are kept only so that links in earlier publications keep working. Please visit the new documentation at mgflast.github.io/Ais.

Welcome to the user guide of Ais - a segmentation suite for cryo-electron tomography data that was designed to be fast, intuitive, and as easy to use as we could make it.

Click here to watch the video introduction to Ais.

Table of contents

Contents:

• Installation
  • Installing Ais via pip
  • CUDA & Tensorflow
  • Settings
• Annotation
  • Overview of the user interface
  • Drawing annotations
  • Placing boxes
  • Manual particle picking and segmentation
• Creating models
  • Creating training datasets
  • Training models
  • Using models
  • Model interactions
• Sharing models
• Batch processing
• Rendering
• Extracting particle coordinates and meshes
  • Particle picking
  • Extracting meshes
• Ais python module
  • Filetypes
  • Models
  • Scripting with Ais
  • Implementing custom model architectures
    • Adding a Keras model
    • Adding a non-Keras model
• Using Ais via the Command Line Interface

Help

Need help? Please post here.